
Dr Mercola
Story at-a-glance
- While short-term ketogenic diets may aid weight loss, new research links prolonged ketosis to liver stress, impaired insulin secretion, and cardiovascular problems
- Long-term fat reliance increases circulating free fatty acids, burdening the liver, disrupting glucose regulation, and weakening metabolic flexibility — key factors in overall energy stability and heart health
- Elevated liver enzymes and triglyceride levels on keto indicate hepatic overload. This signals that the body is struggling to manage excess fat turnover and oxidation
- Treat keto as a short-term metabolic intervention, not a lifestyle diet. Gradually reintroduce whole-food carbohydrates to support steady energy, hormonal balance, and overall metabolic health
- To support balanced metabolism and long-term liver and heart health, keep total fat below 30% of daily calories, eliminate seed oils from your diet, and consume sufficient dietary fiber
For several years, I recommended the ketogenic diet as a way to optimize your metabolic and mitochondrial health. Restricting carbohydrates and shifting the body to rely on fat for fuel seemed, at the time, to be a sound strategy for stabilizing blood sugar and enhancing endurance. Backed by a growing body of published research, it appeared to offer a logical and effective route toward better energy regulation and improved metabolic flexibility.
However, after studying the work of the late Ray Peat, Ph.D., my perspective shifted. His insights into the bioenergetic theory of health revealed how carbohydrate availability is tied to your body’s capacity to sustain healthy energy production. The more I examined his work, the clearer it became that long-term carbohydrate restriction could work against many of the very systems it was meant to support.
Your liver and heart appear to be especially vulnerable under the metabolic strain of a high-fat, low-carb diet. That vulnerability has come under closer scrutiny in a recent Science Advances study1 that examined how prolonged adherence to a ketogenic diet affects metabolic balance, insulin regulation, and organ function. Their findings raise important questions about whether keto side effects outweigh its benefits.
Does Keto Raise Liver Enzymes or Cause Fatty Liver?
In the featured study, researchers examined the long-term keto liver effects in mice for nearly a year. The goal was to determine whether a ketogenic diet, often promoted for weight management and metabolic improvement, might instead strain the liver’s ability to process and regulate fat over time and compromise overall metabolic health.2
• Liver distress emerged despite lower body weight — The study found that even though mice on the ketogenic diet gained less weight than those fed a high-fat, high-carb diet, their liver profiles revealed signs of distress. Plasma triglycerides and non-esterified fats (free fatty acids released from stored fat) were significantly elevated, pointing to hyperlipidemia, a state of excess circulating fat in the bloodstream.
Male mice also developed hepatic steatosis (fat accumulation in the liver), along with increased alanine aminotransferase (ALT) activity. ALT is an enzyme concentrated inside liver cells and plays a role in amino acid metabolism. When liver cells are damaged or die, ALT leaks into the bloodstream, raising measurable levels. Elevated ALT directly reflects hepatocellular injury and indicates that the liver is under metabolic or inflammatory stress.
• Broader metabolic stress accompanied liver injury — Mice on the ketogenic diet developed glucose intolerance, meaning their bodies were less able to keep blood sugar stable after eating, and impaired insulin secretion, showing that the pancreas was not releasing enough insulin to regulate glucose. Together, these findings indicate that liver stress was part of a whole-body imbalance.
In particular, the pancreatic β cells (the cells that make and release insulin) showed disruptions in protein trafficking within the endoplasmic reticulum and Golgi apparatus, which fold and package proteins for secretion. This dysfunction resembled what is seen in early diabetes, where the machinery for insulin release becomes compromised.
• Microscopic evidence confirmed cellular damage — Electron microscopy revealed lipotoxic injury in the liver cells. The Golgi apparatus appeared dilated and fragmented, and genes linked to protein stress responses were upregulated. This pattern shows that long-term exposure to high lipid levels not only drives fat buildup but also interferes with protein processing and communication within cells, further aggravating liver dysfunction.
• Animal findings suggest parallels to human liver responses — Although this work was conducted in mice, the core mechanisms involved in fat regulation, glucose control, and protein processing are highly conserved across species. The authors wrote that their findings “have relevant translational ramifications” and “caution against the systematic use of a KD as a health-promoting dietary intervention.” The table below summarizes the animal findings alongside their human relevance:
Liver Outcomes — Enzymes and Steatosis
| Aspect | Preclinical (Science Advances, 2025) |
Human Relevance (as noted by authors) |
|---|---|---|
| Population | Mice | Not studied directly; authors emphasized the need for human research to confirm whether similar effects occur |
| Exposure | Long-term ketogenic feeding (~1 year) | Prolonged high-fat intake under carbohydrate restriction may have comparable metabolic implications in humans, but further trials are required |
| Main signal | Marked hyperlipidemia, hepatic steatosis, elevated ALT, impaired glucose tolerance, and reduced insulin secretion | Findings carry “relevant translational ramifications,” suggesting caution when applying long-term ketogenic diets for metabolic health |
| Interpretation | Chronic ketogenic feeding stresses liver and pancreatic metabolism, indicating risk of liver injury and glucose dysregulation | Authors caution that extended ketogenic use could have harmful effects on metabolic health, especially regarding β-cell function, plasma lipid levels, and liver health |
• Metabolic deterioration extends beyond the liver — In his analysis of the Science Advances study, bioenergetic researcher Georgi Dinkov added that chronic ketogenic patterns not only damage the liver but also suppress overall energy metabolism by reducing lean muscle mass. This has far-reaching metabolic consequences, since muscle is the most metabolically active tissue in the body and a major driver of resting energy use. These keto side effects often develop silently, without obvious symptoms. If you notice rising liver enzymes or a dull ache under your right rib cage, it may signal that your liver is under stress from the metabolic load. That’s the time to reassess your macronutrient balance before the strain turns chronic.
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Why Would LDL Jump on Keto and Who Are ‘Hyper-Responders’?
In a detailed review published in the American Journal of Preventive Cardiology, researchers from the Mayo Clinic examined a striking pattern among people who experience extreme cholesterol elevations while following a ketogenic diet. This group, often referred to as “hyper-responders,” shows a disproportionate increase in low-density lipoprotein (LDL) “bad” cholesterol and apolipoprotein B (apoB), the particles that actually carry cholesterol through the blood.4,5
• LDL levels spiked dramatically in keto followers — The study reviewed clinical records of 17 adults who presented with LDL cholesterol levels above 190 milligrams per deciliter (mg/dL) while adhering to a high-fat, very-low-carb diet. Before starting keto, their mean LDL level was about 129 mg/dL. After roughly 12 months of strict adherence, that value rose by an average of 245%.
• ApoB reflects the number of cholesterol-carrying particles — Each LDL particle contains one molecule of apolipoprotein B (apoB), a structural protein that anchors cholesterol and triglycerides within the particle. ApoB therefore reflects not just how much cholesterol is present, but how many LDL particles are circulating. The more particles you have, the greater the chance they’ll penetrate inflamed artery walls and promote atherosclerosis, or plaque buildup.
• Genetic predisposition amplified the effect — Ten of the 17 patients had family histories of early heart disease or inherited lipid disorders. Five underwent genetic testing, and two carried mutations in the LDL receptor (LDL-R) gene, which impairs the body’s ability to remove LDL from circulation.
This means LDL particles linger in the blood longer, compounding the cholesterol rise. The researchers suggested that both diet composition and genetic background contributed to the extreme lipid response.
• Lean individuals showed the greatest LDL surge — The largest LDL increases appeared in participants with lower body mass index (BMI). The authors proposed that when carbohydrate intake is severely restricted, leaner individuals rely more heavily on fat oxidation, burning fat for fuel.
This shift ramps up production of very-low-density lipoprotein (VLDL) particles, which transport triglycerides from the liver. As VLDL offloads its fat cargo, it converts into LDL and HDL, explaining why even metabolically healthy or athletic people may see dramatic LDL spikes during keto adaptation.
• Stopping keto reversed the effects — In the study, when patients stopped the ketogenic diet, their LDL levels dropped by an average of 220% within nine months. This rebound emphasizes why anyone with a family history of early heart disease, lipid metabolism variants, or an unexplained rise in LDL or apoB while on keto should do so under medical supervision with regular lipid monitoring.
While the authors blamed saturated fats for higher cardiovascular risk among those on a high-fat, low-carb diet, I believe this repeats the same flawed narrative that has misled the public for decades. I’ll expand on this later, but for now, remember that any discussion of keto’s heart effects needs to move beyond the outdated “saturated fat equals heart disease” myth. The issue appears less about saturated fat itself and more about the metabolic overload created by extreme fat consumption.
Are Heart Palpitations on Keto a Red Flag — or Just Electrolytes?
Keto heart palpitations are among the more common side effects people notice soon after beginning this diet, especially during the first days or weeks of carbohydrate restriction. While mild, short-lived palpitations often resolve, persistent or worsening irregularity can signal deeper strain on the cardiovascular system. Recognizing this connection allows you to support your metabolism without ignoring what your heart is telling you.6,7
• Electrolyte loss drives early palpitations — When carbohydrate intake drops sharply, insulin levels fall and glycogen (stored carbohydrate) is depleted. This shift prompts the kidneys to excrete water along with key minerals, such as sodium, potassium, and magnesium.
These are the body’s electrolytes, which regulate the electrical signals that control heartbeat and muscle contraction. As they drop, the heart’s rhythm can become irregular or faster than usual (tachycardia), especially if hydration is inadequate. Replenishing electrolytes typically stabilizes symptoms within days.
• Fat-based fuel changes cardiac metabolism — Because ketogenic diets push the heart to depend almost entirely on fat oxidation instead of glucose for fuel, this metabolic shift can have unintended effects on cardiac performance, including disturbances in the heart’s electrical rhythm.
Experimental studies in animals also indicate that long-term ketogenic feeding may promote adverse remodeling of the heart muscle — characterized by fibrosis and changes in tissue structure — that can interfere with normal electrical conduction and raise the likelihood of arrhythmias such as atrial fibrillation.8
• When to address symptoms — Occasional palpitations during keto adaptation often resolve with hydration and mineral-rich foods like leafy greens and bone broth. However, ongoing rapid or irregular heartbeats, chest tightness, or palpitations accompanied by dizziness or shortness of breath require prompt evaluation. These may reflect electrical or structural strain on the heart, especially in individuals with high cholesterol, high blood pressure, or pre-existing heart disease.
• Simple checks before medical evaluation — Ensure adequate hydration, avoid caffeine and stimulant intake, and reassess whether palpitations persist once electrolytes stabilize. Thyroid hormone dosing, anemia, and overtraining can also contribute. If the symptoms continue after addressing these factors, a medical evaluation is essential. A basic electrocardiogram (ECG) and blood panel can identify early electrical or metabolic disturbances before they progress.
Learn more about the cardiovascular effects of ketogenic diets in “The Ketogenic Diet Can Put Your Cardiovascular Health at Risk.”
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Throughout the whole human history, the most common diet has been ketogenic. If that was bad and harmful, we wouldn’t be here today. Issues appeared first when the humans settled down and began to grow different types of grains (and ate it of course). Consider that herbivores refuse to eat grains, unless being forced like today (even though horses may chomp om oat). To them, it is inedible weed …
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I think it depends how far back you go. I know of only two cultures that historically have eaten a purely meat based diet (meaning it was ketogenic because they had no source of carbs.) Those are the Masai culture in Africa and the Inuit and related cultures in the far North.
The Neanderthal diet is the only one I know that has been studied extensively. Their diet was mainly based on the carbs in nuts, berries and tubers with meat if they got lucky.
I made myself very ill by following a ketogenic diet for several years, with major bone loss in my jaw and muscle loss in my right leg. I eventually got really severe dizzy spells that vanished when I increased my carb intake.
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Sorry for late respond …
Nuts, berries and even fruits are seasonal stuff and it’s getting worse the closer to the polar regions one gets. During the winter, forget it, unless being lucky and finding something frozen beneith the snow, but nothing in quantity. In between seasons, something else had to be collected for food. Not even the tropics have supplies around the year, so vast latitude distancies across the equator is required, but not even that is enough.
If the study of the Neanderthals is even close to correct, they survived very long time in Europe in that respect.
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Good points.
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